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Trial registered on ANZCTR
Registration number
ACTRN12624000748516
Ethics application status
Approved
Date submitted
13/03/2024
Date registered
17/06/2024
Date last updated
5/10/2024
Date data sharing statement initially provided
17/06/2024
Type of registration
Prospectively registered
Titles & IDs
Public title
The impact of preoperative oral antibiotics on the microbiome and microbiology of the colon
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Scientific title
The impact of preoperative oral antibiotics on the microbiome and microbiology of the colon
A study embedded into the Colorectal Anastomosis and Bacterial Eradication (CABE) trial
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Secondary ID [1]
311715
0
none
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Universal Trial Number (UTN)
U1111-1299-7148
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Trial acronym
CABE_Micro
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Linked study record
Australia Clinical Trials Registry Number (parent study): 12622000285752
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Health condition
Health condition(s) or problem(s) studied:
colorectal cancer
333193
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Condition category
Condition code
Cancer
329881
329881
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0
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Bowel - Back passage (rectum) or large bowel (colon)
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Intervention/exposure
Study type
Observational
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Patient registry
False
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Target follow-up duration
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Target follow-up type
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Description of intervention(s) / exposure
This observational sub-study is occurring as part of a randomised controlled trial (registered as ACTRN12622000285752) where participants are randomised to oral antibiotics (OAB) or placebo in addition to routine care as part of the participating patient's bowel preparation on the day before surgery. Broad spectrum Intravenous antibiotics (IV) will be administered according to individual hospital guidelines. IV antibiotics administered will have adequate aerobic and anaerobic antimicrobial coverage. The use of mechanical bowel preparation (MBP) and enemas will be determined according to individual hospital guidelines. The exposure to OAB will be randomised according to the parent trial protocol.
OAB Group
1. Standard pre-operative preparation for surgery, including the decision to use MBP or not, as per institutional protocol
2. OAB: 1 g neomycin and 400 mg metronidazole PO at 13:00, 14:00 and 20:00 on the day before surgery. No laboratory test will be used to monitor adherence.
The observational sub-study involves the additional collection of rectal swabs on the day before surgery, in theatre, five days postoperative or discharge whichever is sooner. For those that develop an anastomotic leak, a swab of the anastomosis will be taken at the time of treatment for the leak.
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Intervention code [1]
328179
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Not applicable
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Comparator / control treatment
The control group is the Standard care group that receives standard pre-operative preparation for surgery and placebo as described in ACTRN12622000285752
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Control group
Placebo
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Outcomes
Primary outcome [1]
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Alpha diversity of the colonic microbiota,
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Assessment method [1]
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Rectal swabs inserted 4-6 cm into the distal rectum will be applied to the surface of the rectal mucosa, taken by the treating clinician. These swabs will be preserved in DNA/RMA shield Collection tubes for microbiome 16S rRNA analysis (Flores, R. et al. DOI: 10.1111/j.1365-2362.2012.02659.x)
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Timepoint [1]
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one to two weeks before surgery (at preadmission), during surgery (primary timepoint), and five days after surgery or on discharge (whichever is sooner)
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Primary outcome [2]
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The presence of Pseudomonas Aeruginosa (PSA)
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Assessment method [2]
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Rectal swabs inserted 4-6 cm into the distal rectum will be applied to the surface of the rectal mucosa, taken by the treating clinician. these swabs will be placed in a 10% glycerol solution and frozen at -80oC. Swabs preserved in glycerol will be defrosted and cultured in, Pseudomonas isolation agar, m-Enteroccous agar, and plate count for 48 hours. Colonies will be isolated and grown in liquid media for purity. Microbial strains grown in purity will be identified with matrix-assisted laser desorption/ionization coupled to a time-of-flight mass spectrometer (MALDI-ToF), and frozen in 10% glycerol at -80°C in case reanalysis of the strain is needed during the study. Collagenase activity will be determined by EnzChek Gelatinase/Collagenase Assay Kits (Molecular Probes, Oregon, USA) according to the manufacturer’s instructions. After the study, the remaining samples or frozen strains will be destroyed.
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Timepoint [2]
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one to two weeks before surgery (at preadmission), during surgery (primary timepoint), and five days after surgery or on discharge (whichever is sooner)
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Primary outcome [3]
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Beta diversity of the colon microbiota
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Assessment method [3]
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Rectal swabs inserted 4-6 cm into the distal rectum will be applied to the surface of the rectal mucosa, taken by the treating clinician. These swabs will be preserved in DNA/RMA shield Collection tubes for microbiome 16S rRNA analysis (Flores, R., Shi, J., Gail, M. H., Gajer, P., Ravel, J., & Goedert, J. J. (2012). Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences. European journal of clinical investigation, 42(8), 855-863.)
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Timepoint [3]
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one to two weeks before surgery (at preadmission), during surgery (primary timepoint), and five days after surgery or on discharge (whichever is sooner)
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Secondary outcome [1]
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Anastomotic leak (AL)
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Assessment method [1]
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AL is defined as a defect in the bowel wall at the anastomotic site leading to leakage of intestinal contents. This can be either diagnosed radiologically, endoscopically, intra-operatively or clinically. They will be graded using the framework of the International Study Group of Rectal Cancer proposed grading system for anastomotic leak.
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Timepoint [1]
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Leaks will be classified from the time of surgery as early: Developing 3 days or less after surgery, intermediate: Developing 4 to 7 days after surgery or late: Developing 8 days or more after surgery.
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Secondary outcome [2]
432705
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Incisional Surgical site infections
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Assessment method [2]
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Incisional Surgical site infections is defined with the Centres for Disease Control (CDC) definitions of superficial incisional and deep incisional surgical site infection. These will be assessed and identified by the clinical care team
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Timepoint [2]
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Standard wound checks will be conducted on day 5 post-operation or the day before discharge if the length of stay is less than five days. This will be followed by a patient reported outcome questionnaire (The Bluebelle wound healing questionnaire) at thirty days.
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Secondary outcome [3]
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Serious Adverse events, defined as in Common Terminology Criteria for Adverse Events (CTCAE) v4 criteria. These include an event that leads to death or serious deterioration in the health of the subject resulting in life-threatening illness or injury or permanent impairment.
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Assessment method [3]
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Follow up by clinical care team and researchers using electronic health records or direct observation
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Timepoint [3]
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Daily whilst the participant is an inpatient and once the intervention is administered. Then once at 30 day follow up visit until resolution of the AE.
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Secondary outcome [4]
432743
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Foreseeable Adverse event. These are common side effects of oral Neomicina Salvat and Metronidazole. These include: nausea, vomiting diarrhea, bloating, headaches (common). Uncommon side effects include ototoxicity, nephrotoxicity, anaphylaxis, and peripheral neuropathy
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Assessment method [4]
432743
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Follow-up by the clinical care team or the researchers, using electronic health records or direct observation
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Timepoint [4]
432743
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Daily whilst the participant is an inpatient and once the intervention is administered. Then once at 30 day follow up visit until resolution of the AE.
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Secondary outcome [5]
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Postoperative Ileus
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Assessment method [5]
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Ileus will be diagnosed with the prolonged postoperative ileus (PPOI) score. This will be evaluated if the bowels are not working from post-operative day 4 onwards. This is diagnosed if 2 out of the following 5 criteria are fulfilled: Nausea or vomiting within last 12 hours, Inability to tolerate oral diet for 2 previous meal times; or <25% of pre-op meal quantity, No flatus and stool over last 24 hours, Moderate or severe abdominal distention, Radiologic confirmation within the last 24 hours, AXR dilatation (SB>3cm) CT abdomen with the report stating ileus. These will be determined from hospital records and consultation with the patient's clinical team.
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Timepoint [5]
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Daily from the date of surgical procedure to day of discharge.
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Secondary outcome [6]
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length of stay (LOS)
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Assessment method [6]
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LOS is defined as the number of days from the day of surgery to discharge. This will be recorded by the researchers using patient electronic records
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Timepoint [6]
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Once on the day of discharge.
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Secondary outcome [7]
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Readmission to hospital
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Assessment method [7]
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Readmission to the hospital within 30 days, recorded by the researchers using patient electronic records
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Timepoint [7]
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Once on the 30-day follow-up.
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Secondary outcome [8]
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Postoperative complications not already mentioned
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Assessment method [8]
432747
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These will be documented by the clinical care team in the patient electronic records and recorded by the researchers by accessing these records
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Timepoint [8]
432747
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Daily from the time of the operative procedure until discharge, and then once on the 30-day follow-up visit.
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Secondary outcome [9]
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PRIMARY OUTCOME - Presence of Enterococcus faecalis (ENF)
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Assessment method [9]
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Rectal swabs inserted 4-6 cm into the distal rectum will be applied to the surface of the rectal mucosa, taken by the treating clinician. these swabs will be placed in a 10% glycerol solution and frozen at -80oC. Swabs preserved in glycerol will be defrosted and cultured in, Pseudomonas isolation agar, m-Enteroccous agar, and plate count for 48 hours. Colonies will be isolated and grown in liquid media for purity. Microbial strains grown in purity will be identified with matrix-assisted laser desorption/ionization coupled to a time-of-flight mass spectrometer (MALDI-ToF), and frozen in 10% glycerol at -80°C in case reanalysis of the strain is needed during the study. After the study, the remaining samples or frozen strains will be destroyed.
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Timepoint [9]
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one to two weeks before surgery, during surgery (primary timepoint), three days after surgery, and five days after surgery or on discharge (whichever is sooner)
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Secondary outcome [10]
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PRIMARY OUTCOME - Collagenase production of isolated bacterial strains
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Assessment method [10]
433381
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Rectal swabs inserted 4-6 cm into the distal rectum will be applied to the surface of the rectal mucosa, taken by the treating clinician. these swabs will be placed in a 10% glycerol solution and frozen at -80oC. Swabs preserved in glycerol will be defrosted and cultured in, Pseudomonas isolation agar, m-Enteroccous agar, and plate count for 48 hours. Colonies will be isolated and grown in liquid media for purity. Microbial strains grown in purity will be identified with matrix-assisted laser desorption/ionization coupled to a time-of-flight mass spectrometer (MALDI-ToF), and frozen in 10% glycerol at -80°C in case reanalysis of the strain is needed during the study. Collagenase activity will be determined by EnzChek Gelatinase/Collagenase Assay Kits (Molecular Probes, Oregon, USA) according to the manufacturer’s instructions. After the study, the remaining samples or frozen strains will be destroyed.
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Timepoint [10]
433381
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one to two weeks before surgery, during surgery (primary timepoint), three days after surgery, and five days after surgery or on discharge (whichever is sooner)
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Eligibility
Key inclusion criteria
1. Patients undergoing elective colorectal resection with primary anastomosis – this includes open, laparoscopic, or robotic resections.
2. Above the age of 18
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Minimum age
18
Years
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Maximum age
No limit
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Sex
Both males and females
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Can healthy volunteers participate?
No
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Key exclusion criteria
1. Emergency surgery
2. Allergy to metronidazole or neomycin
3. Has received antibiotics in the preceding month before first sample collection
4. Pregnancy
5. Inability to consent
6. Post-Randomisation exclusion: No anastomosis performed
7. Patients having surgery with a rectal anastomosis will have swabs 1 and 2 performed, but will be excluded from having swabs 3 and 4 done.
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Study design
Purpose
Natural history
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Duration
Longitudinal
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Selection
Defined population
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Timing
Prospective
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Statistical methods / analysis
Sequential patients enrolled in the parent study will be invited to participate until we reach 15 patients in the following four groups:
a) Broad spectrum IV antibiotics only (IV)
b) IV and preoperative oral antibiotics (IV+OA)
c) IV and mechanical bowel preparation (IV+MBP)
d) IV and OA and MBP (IV+OA+MBP)
The statistics for the parent study are described in ACTRN12622000285752. The statistics for the microbiome and microbiology sub-study are described as follows:Alpha diversity will be calculated with Richness, Shannon index, and Simpson index. Comparison of alpha diversity will be performed with the Wilcoxon-Mann Whitney test. Beta diversity will be calculated with UniFrac and or Bray-Curtis, and analysed with principal component analysis and visualised with multi-dimensional scaling. Culture and collagenase will be analysed using the Chi squared test.
The following comparisons will be made:
1. Participants that fall into the different treatment groups will be compared between each other and over time.
Patients who suffer anastomotic leak will be compared against matched controls.
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Recruitment
Recruitment status
Not yet recruiting
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Date of first participant enrolment
Anticipated
21/10/2024
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Actual
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Date of last participant enrolment
Anticipated
30/08/2026
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Actual
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Date of last data collection
Anticipated
3/09/2026
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Actual
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Sample size
Target
60
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Accrual to date
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Final
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Recruitment outside Australia
Country [1]
26196
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New Zealand
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State/province [1]
26196
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Otago and Canterbury
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Funding & Sponsors
Funding source category [1]
316044
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Charities/Societies/Foundations
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Name [1]
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Lottery Health
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Address [1]
316044
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Country [1]
316044
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New Zealand
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Funding source category [2]
316059
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Government body
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Name [2]
316059
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Health Research Council
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Address [2]
316059
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Country [2]
316059
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New Zealand
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Primary sponsor type
University
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Name
Otago University
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Address
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Country
New Zealand
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Secondary sponsor category [1]
318206
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None
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Name [1]
318206
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Address [1]
318206
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Country [1]
318206
0
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Other collaborator category [1]
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Hospital
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Name [1]
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Dunedin Hospital (Health New Zealand)
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Address [1]
282976
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Country [1]
282976
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New Zealand
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Other collaborator category [2]
282977
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Hospital
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Name [2]
282977
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Christchurch Hospital (Health New Zealand)
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Address [2]
282977
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Country [2]
282977
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New Zealand
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Ethics approval
Ethics application status
Approved
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Ethics committee name [1]
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Southern Health and Disability Ethics Committee
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Ethics committee address [1]
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https://ethics.health.govt.nz/about/southern-health-and-disability-ethics-committee/
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Ethics committee country [1]
314866
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New Zealand
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Date submitted for ethics approval [1]
314866
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22/02/2024
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Approval date [1]
314866
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12/07/2024
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Ethics approval number [1]
314866
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Summary
Brief summary
The setting is a multi-centre, double-blinded, randomised controlled trial comparing standard unit preparation with and without oral antibiotics in adult patients undergoing elective colorectal surgery with a planned anastomosis. One group will receive OAB and the other an identical appearing placebo capsules. The observational sub-study will comprise patients who will provide samples for microbiome analysis. This will include four groups of 15 patients who will receive different types of bowel preparation and an analysis of patients with anastomotic leaks and matched controls.
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Trial website
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Trial related presentations / publications
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Public notes
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Contacts
Principal investigator
Name
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Dr John Woodfield
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Address
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4th Floor Dunedin Hospital, Department of Surgical Sciences, 201 Great king St, Dunedin, 9054
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Country
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New Zealand
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Phone
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+64 276085111
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Fax
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Email
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[email protected]
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Contact person for public queries
Name
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Kari Clifford
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Address
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4th Floor Dunedin Hospital, Department of Surgical Sciences, 201 Great king St, Dunedin, 9054
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Country
132983
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New Zealand
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Phone
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+64 210668369
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Fax
132983
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Email
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[email protected]
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Contact person for scientific queries
Name
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Kari Clifford
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Address
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4th Floor Dunedin Hospital, Department of Surgical Sciences, 201 Great king St, Dunedin, 9054
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Country
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New Zealand
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Phone
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+64 210668369
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Fax
132984
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Email
132984
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[email protected]
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Data sharing statement
Will individual participant data (IPD) for this trial be available (including data dictionaries)?
Yes
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What data in particular will be shared?
anonymised individual participant data
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When will data be available (start and end dates)?
data will be available at the end of the trial, once we have published the data. The data will be unavailable 10 years following publication.
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Available to whom?
to researchers upon reasonable requests
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Available for what types of analyses?
available for meta analyses and other analyses looking at the study outcomes.
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How or where can data be obtained?
Data can be obtained from the trial coordinator via email:
[email protected]
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What supporting documents are/will be available?
No Supporting Document Provided
Results publications and other study-related documents
Documents added manually
No documents have been uploaded by study researchers.
Documents added automatically
No additional documents have been identified.
Download to PDF